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Version: 1.0.0 | Published: 15 Apr 2026 | Updated: 0 days ago
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SARS-CoV-2 viral sequencing data (COG-UK data) - Lineage/Variant Data - Scotland

Dataset

Summary

Population Size:
-1
Publication Date:
19 August 2021
Contact Point:

Documentation

Description:
File contains basic public metadata, including sequence_name, location, date, pangolin lineage assignment, version and associated scores, scorpio VOC/VUI constellation call and associated scores, key spike protein mutations calls and a list of all nucleotide mutations found.
In Pipeline:
Not available

Coverage

Spatial:
  • United Kingdom
  • Scotland
Typical Age Range Min:
0
Typical Age Range Max:
150
Material Type:
None/not available
Follow Up:
Other
Pathway:
No

Provenance

Origin

Purpose:
Other
Dataset Type:
Health and disease
Dataset Sub-Type:
Not applicable
Source:
LIMS
Image Contrast:
Not stated

Temporal

Publishing Frequency:
Weekly
Distribution Release Date:
19 August 2021
Start Date:
28 February 2021
Time Lag:
1-2 weeks

Accessibility

Access

Access Service Category:
TRE/SDE
Access Service:
Scottish National Safe Haven / Trusted Research Environment https://publichealthscotland.scot/services/data-research-and-innovation-services/electronic-data-research-and-innovation-service-edris/national-safe-haven-nsh/
Delivery Lead Time:
2-4 weeks
Data Controller:
Public Health Scotland
Data Processor:
Public Health Scotland
Jurisdiction:
Scotland

Usage

Data Use Limitation:
Genetic studies only
Data Use Requirements:
Project-specific restrictions
Resource Creator:
COG-UK

Format and Standards

Vocabulary Encoding Scheme:
OTHER
Conforms To:
OTHER
Language:
English
Format:
csv

Observations

Statistical Population
Population Description
Population Size
Measured Property
Observation Date
Events
721005
Count
20 August 2021